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Homepage | FoldX
The FoldX Suite builds on the strong fundament of advanced protein design features, already implemented in the successful FoldX3, and exploits the power of fragment libraries, by integrating in silico digested backbone protein fragments of different lengths
Manual | FoldX
The FoldX Suite version 5 0 allows to parametrize custom small molecules A manual explaining how to proceed with the parameterization (working only in version 5 0) can be found here
Products | FoldX
The FoldX Suite builds on the strong fundament of advanced protein design features already implemented in the oldest FoldX versions and integrates new capabilities: loop reconstruction (LoopX) and peptide docking (PepX)
About | FoldX
FoldX was developed by the FoldX consortium, centered around the laboratory of Luis Serrano at the European Molecular Biology Laboratory in Heidelberg and at Center for Genomic Regulation in Barcelona
BuildModel | FoldX
Output files contains the Gibbs energy of protein folding decomposed into the different terms used by FOLDX The files Dif_, Average_ and Raw_ have same headers with the energy terms decomposition in Kcal mol, the colums are:
FoldX | FoldX documentation site
FoldX uses a full atomic description of the structure of the proteins The different energy terms taken into account in FoldX have been weighted using empirical data obtained from protein engineering experiments
Stability | FoldX
It can be run from the command line: FoldX --command=Stability --pdb=ST pdb FoldX uses output-file as a tag to label different outputs from different commands in batch runs After running Stability you'll get one file to look at Given output-file="TAG" the output file is: TAG_ST fxout -> calculates the different DG energy terms of folding the
FoldX Academic License - CRG
Download FoldX Academic License FoldX Academic License Submitted by Javi on Wed, 02 18 2015 - 11:08 To proceed to the download page, you need to be registered and logged in Register to FoldX WebSite
RepairPDB | FoldX
It is highly recommended to repair your structures before you do any modelling with FoldX RepairPDB identify those residues which have bad torsion angles, or VanderWaals' clashes, or total energy, and repairs them
Pssm | FoldX
This is an example of how the new implementation of FoldX can create complex commands by combining the basic ones The minimal configuration file for Pssm is: command=Pssm analyseComplexChains=A,B pdb=PM pdb aminoacids=ACD positions=GA5a,GA14a It can be run from the command line: